Welcome to NL-BIOMEROβs documentation!ο
NL-BIOMERO delivers a complete FAIR-oriented bioimaging infrastructure built on OMERO and BIOMERO 2.0.
π¬ What is BIOMERO 2.0?
An end-to-end platform that transforms OMERO into a provenance-aware system for bioimage data import, analysis, and sharing. π Read our preprint
π Why use NL-BIOMERO?
Get a unified environment where raw data flows seamlessly through automated import, preprocessing, analysis workflows, and resultsβall with complete provenance tracking and FAIR compliance.
π Get Started Now!ο
Choose your path forward:
Core Platform Componentsο
This documentation serves as your main gateway to the BIOMERO 2.0 ecosystem. Each component below links to both external documentation and local integration guides:
β‘ BIOMERO.analyzer
Remote high-performance computing workflow management for FAIR image analysis
π οΈ BIOMERO.scripts
Run BIOMERO.analyzer directly from OMERO.web via these BIOMERO.scripts
π₯ BIOMERO.importer
User-friendly data import workflows for in-place importing - keep your raw data where it belongs!
π OMERO.forms
Flexible metadata annotation interfaces
𧩠OMERO.biomero
Modern web interfaces for BIOMERO.importer and BIOMERO.analyzer
π Metabase
Analytics and visualization dashboards for live progress tracking
π¬ OMERO
Renowned image data management platform for microscopy data
π³ Docker
Easy deployment and scaling scenarios
Note
Deployment, migration, and backup procedures shown in this documentation are examples for inspiration. They are not prescriptive recommendations and may not address all environments. Always adapt and validate them for your organizationβs security, compliance, and operational requirements.
π‘ This documentation covers containerized deployment scenarios. For non-containerized installations, refer to the individual component documentation.