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General container requirements

Input arguments

  • --inputfile (required): Path to the input file
  • --outputfolder (required): Output directory for converted files
  • --altoutputfolder (optional): Alternative output directory
  • --show_progress (optional): Show progress bar during conversion (boolean value)

Output format

The container should return the following output as JSON string

A list containing a dictionary of: * name: base name of the created or relevant file (without extension) * full_path: absolute path to the output file * alt_path: absolute path to the file in altoutputfolder (if used and file exists), else null * keyvalues (optional): a list with a dictionary containing per-channel intensity stats and optional metadata

keyvalues example

"keyvalues":
[
  {
    "channel_mins": [1097, 2257, 335, 175],
    "channel_maxs": [7423, 5907, 10261, 3716],
    "channel_display_black_values": [1179, 2357, 372, 202],
    "channel_display_white_values": [6798, 5641, 7002, 2969]
  }
]