BIOMERO

BIOMERO - Get Started

  • BIOMERO - BioImage analysis in OMERO
  • BIOMERO 2.0
  • Overview
  • Quickstart
  • Prerequisites & Getting Started with BIOMERO
  • BIOMERO.scripts
  • BIOMERO Web Interface
  • (Docker) containers
  • See the tutorials
  • Developer: Eventsourcing and Views
  • SSH
  • SlurmClient class
  • slurm-config.ini
  • How to add an existing workflow
  • How to add your new custom workflow
  • Slurm jobs
  • Batching
  • Using the GPU on Slurm
  • Transfering data
  • Testing the Python code
  • Logging

Tutorials

  • Cellprofiler tutorial
  • CellExpansion tutorial
  • Local Slurm tutorial
  • Google Cloud Slurm tutorial
  • Microsoft Azure Slurm tutorial
  • Extra thoughts

Configuration

  • SLURM Configuration Guide
  • Troubleshooting
  • FAQ
  • Further Reading

Package

  • biomero

Developer

  • Eventsourcing and Views (Developer)
BIOMERO
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