BIOMERO OME-Zarr Viewer

BIOMERO OME-Zarr Viewer is the read-only OME-Zarr viewer for the BIOMERO ecosystem. It opens physical OME-Zarr images and HCS plates registered in OMERO, with multichannel display, Z/T navigation, label overlays, and Field, Well, and Plate navigation.

Start here

• Users: read the viewer guide for supported objects, label controls, shallow-Zarr behavior, and current limitations.
• NL-BIOMERO administrators: use the integrated deployment guide.
• Custom OMERO administrators: use the OMERO deployment-kit guide as the reference integration.
• Maintainers: review the compatibility matrix and open-source provenance.

What the viewer does

The viewer resolves an OMERO Image, Plate, or Well to one authorized physical OME-Zarr store. For a BIOMERO shallow result, it combines canonical intensity pixels with the retained label paths from the shallow store. The browser sees one logical dataset, while OMERO permissions and short-lived signed contexts authorize every metadata and chunk request.

The viewer does not import data, convert conventional OMERO pixels to Zarr, or edit segmentations. BIOMERO or another compatible importer must create and register the physical store first.