Workflow models

biomero_schema.models

Pydantic models for the workflow schema.

Author

Bases: BaseModel

Author model.

Institution

Bases: BaseModel

Institution model.

Citation

Bases: BaseModel

Citation model.

ContainerImage

Bases: BaseModel

Container image model.

CudaRequirements

Bases: BaseModel

CUDA requirements model.

Resources

Bases: BaseModel

Resources model.

Configuration

Bases: BaseModel

Configuration model.

FileParameter

Bases: BaseModel

File parameter specific fields.

ImageParameter

Bases: BaseModel

Image parameter specific fields.

ArrayParameter

Bases: BaseModel

Array parameter specific fields.

Parameter

Bases: BaseModel

Parameter model.

OutputParameter

Bases: BaseModel

Output parameter model.

WorkflowSchema

Bases: BaseModel

Main workflow schema model.

requires_zarr property

requires_zarr: bool

True when any image input uses a ZARR format or has plate subtype.

requires_plate property

requires_plate: bool

True when any image input has plate subtype.